Variant report

Variant	rs7151016
Chromosome Location	chr14:32802294-32802295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32801679..32804080-chr14:32811528..32814330,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10135545	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10139496	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs10139567	0.89[CEU][hapmap];0.86[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10140077	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10140526	0.94[JPT][hapmap]
rs10145127	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10145282	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10150574	0.89[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10150657	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10150670	0.89[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10151233	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10431651	0.83[CEU][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.85[AMR][1000 genomes]
rs11849373	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11849501	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11849651	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12050081	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs12717220	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs12883558	0.89[CEU][hapmap];0.81[CHB][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12885011	0.89[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12891932	0.80[EUR][1000 genomes]
rs12896756	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs12897283	0.89[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17098722	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17098769	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17098849	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs17098889	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs34247479	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35403923	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58625904	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6571510	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67938997	0.83[AMR][1000 genomes]
rs7146346	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7147028	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7147285	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs7148036	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs7148808	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7151681	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs7153398	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs8006624	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8017400	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs8019207	0.89[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8020196	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8020197	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9285569	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs9322889	0.89[CEU][hapmap];0.81[CHB][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9322890	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322892	0.81[AMR][1000 genomes]
rs9322893	0.81[EUR][1000 genomes]
rs9322894	0.89[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9322899	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.83[AMR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32788800-32811800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:32796600-32802400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
4	chr14:32797800-32803400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:32799400-32814600	Weak transcription	Left Ventricle	heart
6	chr14:32799600-32802800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:32799800-32802800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:32800000-32803200	Enhancers	Fetal Intestine Small	intestine
9	chr14:32800000-32803400	Enhancers	Fetal Intestine Large	intestine
10	chr14:32800200-32813200	Weak transcription	Esophagus	oesophagus
11	chr14:32800400-32806000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr14:32800600-32805200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr14:32800800-32802600	Enhancers	K562	blood
14	chr14:32800800-32811600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr14:32801000-32802400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr14:32801000-32806000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:32801000-32811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:32801200-32802400	Flanking Active TSS	Brain Angular Gyrus	brain
19	chr14:32801400-32802400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:32801600-32802400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr14:32801600-32802400	Enhancers	HMEC	breast
22	chr14:32801600-32802600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:32801800-32802400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:32801800-32802400	Flanking Active TSS	Brain Hippocampus Middle	brain
25	chr14:32801800-32802400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:32801800-32802400	Enhancers	Stomach Mucosa	stomach
27	chr14:32801800-32802800	Enhancers	Brain Substantia Nigra	brain
28	chr14:32801800-32804400	Enhancers	Brain Anterior Caudate	brain
29	chr14:32802000-32802400	Enhancers	Liver	Liver
30	chr14:32802000-32802400	Active TSS	Fetal Brain Female	brain
31	chr14:32802000-32802600	Enhancers	Fetal Brain Male	brain
32	chr14:32802000-32802800	Active TSS	Brain Germinal Matrix	brain
33	chr14:32802200-32802400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
34	chr14:32802200-32802400	Flanking Active TSS	NHEK	skin
35	chr14:32802200-32802600	Enhancers	Brain Cingulate Gyrus	brain

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