Variant report

Variant	rs12897283
Chromosome Location	chr14:32816199-32816200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10129967	0.92[ASN][1000 genomes]
rs10135545	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10136452	0.94[ASN][1000 genomes]
rs10139496	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10139567	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10140077	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10140526	0.95[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs10143009	0.92[ASN][1000 genomes]
rs10143442	0.92[ASN][1000 genomes]
rs10145127	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10145282	0.89[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10150574	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10150657	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10150670	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10151233	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10220343	0.92[ASN][1000 genomes]
rs10431651	0.94[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11849373	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11849501	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11849651	0.89[CEU][hapmap];0.95[CHB][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12050081	1.00[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs12717220	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs12879177	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12883558	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12885011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12889258	0.94[ASN][1000 genomes]
rs12896756	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs17098722	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17098769	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17098849	1.00[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs17098889	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs1998429	0.94[ASN][1000 genomes]
rs28451992	0.92[ASN][1000 genomes]
rs28563822	0.92[ASN][1000 genomes]
rs28599717	0.92[ASN][1000 genomes]
rs34247479	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35403923	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784171	0.88[CEU][hapmap]
rs58625904	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6571510	0.89[CEU][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66517744	0.92[ASN][1000 genomes]
rs67938997	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7146034	0.85[ASN][1000 genomes]
rs7146346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146562	0.94[ASN][1000 genomes]
rs7147028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147285	1.00[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs7148036	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs7148808	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7151016	0.89[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7151681	1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs7153398	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs717616	0.84[CEU][hapmap]
rs8006624	0.89[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8017400	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs8019207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8020196	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020197	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285569	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs9322889	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322890	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322892	0.86[AMR][1000 genomes]
rs9322893	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9322894	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322899	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
2	chr14:32802600-32819000	Weak transcription	Fetal Brain Male	brain
3	chr14:32803200-32821600	Weak transcription	Fetal Brain Female	brain
4	chr14:32814000-32827800	Weak transcription	Brain Germinal Matrix	brain
5	chr14:32814800-32824000	Weak transcription	Aorta	Aorta
6	chr14:32815000-32816600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:32815000-32818000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:32815000-32819000	Weak transcription	GM12878-XiMat	blood
9	chr14:32815000-32823600	Weak transcription	Brain Anterior Caudate	brain
10	chr14:32815000-32827000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:32815200-32818000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:32815200-32818000	Weak transcription	HMEC	breast
13	chr14:32815200-32818200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:32815200-32823600	Weak transcription	Brain Angular Gyrus	brain
15	chr14:32815400-32816800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:32815400-32817200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:32815400-32821800	Weak transcription	Brain Substantia Nigra	brain
18	chr14:32815400-32825600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr14:32815600-32818000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr14:32815600-32818000	Weak transcription	NHEK	skin

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