Variant report

Variant	rs17098769
Chromosome Location	chr14:32806171-32806172
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10129967	0.84[ASN][1000 genomes]
rs10135545	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10136452	0.85[ASN][1000 genomes]
rs10139496	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10139567	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10140077	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10140526	0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs10143009	0.84[ASN][1000 genomes]
rs10143442	0.84[ASN][1000 genomes]
rs10145127	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10145282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150574	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10150657	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10150670	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10151233	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10220343	0.84[ASN][1000 genomes]
rs10431651	0.83[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap]
rs11849373	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11849501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849651	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050081	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12717220	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs12879177	0.83[ASN][1000 genomes]
rs12883558	0.89[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12885011	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12889258	0.85[ASN][1000 genomes]
rs12891932	0.81[EUR][1000 genomes]
rs12896756	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs12897283	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17098722	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17098849	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs17098889	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1998429	0.85[ASN][1000 genomes]
rs28451992	0.84[ASN][1000 genomes]
rs28563822	0.84[ASN][1000 genomes]
rs28599717	0.84[ASN][1000 genomes]
rs34247479	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35403923	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58625904	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6571510	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66517744	0.84[ASN][1000 genomes]
rs67938997	0.80[ASN][1000 genomes]
rs7146346	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7146562	0.85[ASN][1000 genomes]
rs7147028	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7147285	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7148036	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7148808	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7151016	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7151681	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7153398	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs8006624	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8017400	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs8019207	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8020196	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8020197	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9285569	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs9322889	0.89[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322890	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9322893	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322894	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9322899	0.83[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32788800-32811800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
3	chr14:32799400-32814600	Weak transcription	Left Ventricle	heart
4	chr14:32800200-32813200	Weak transcription	Esophagus	oesophagus
5	chr14:32800800-32811600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:32801000-32811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:32802400-32806400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr14:32802600-32819000	Weak transcription	Fetal Brain Male	brain
9	chr14:32802800-32810000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:32803200-32809200	Enhancers	Brain Substantia Nigra	brain
11	chr14:32803200-32814000	Weak transcription	Fetal Intestine Small	intestine
12	chr14:32803200-32821600	Weak transcription	Fetal Brain Female	brain
13	chr14:32804200-32806400	Enhancers	Brain Cingulate Gyrus	brain
14	chr14:32805200-32806400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr14:32805400-32806200	Flanking Active TSS	K562	blood
16	chr14:32805600-32806200	Strong transcription	Brain Germinal Matrix	brain
17	chr14:32805600-32806400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:32805600-32806600	Enhancers	Brain Anterior Caudate	brain
19	chr14:32805600-32808600	Weak transcription	Brain Angular Gyrus	brain
20	chr14:32805600-32808600	Weak transcription	Brain Hippocampus Middle	brain
21	chr14:32805800-32806200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:32805800-32810800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:32806000-32806200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:32806000-32806400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr14:32806000-32806400	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr14:32806000-32806400	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr14:32806000-32810200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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