Variant report

Variant	rs58625904
Chromosome Location	chr14:32830938-32830939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10129967	0.88[ASN][1000 genomes]
rs10135545	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10136452	0.86[ASN][1000 genomes]
rs10139496	0.85[ASN][1000 genomes]
rs10139567	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10140077	0.90[EUR][1000 genomes]
rs10140526	0.86[ASN][1000 genomes]
rs10143009	0.88[ASN][1000 genomes]
rs10143442	0.85[ASN][1000 genomes]
rs10145127	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10145282	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10150574	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10150657	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10150670	0.92[EUR][1000 genomes]
rs10151233	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10220343	0.85[ASN][1000 genomes]
rs10431651	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11849373	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11849501	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11849651	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12050081	0.88[ASN][1000 genomes]
rs12717220	0.86[ASN][1000 genomes]
rs12879177	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12883558	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12885011	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12889258	0.86[ASN][1000 genomes]
rs12896756	0.86[ASN][1000 genomes]
rs12897283	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17098722	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17098769	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17098849	0.86[ASN][1000 genomes]
rs17098889	0.88[ASN][1000 genomes]
rs1998429	0.86[ASN][1000 genomes]
rs28451992	0.88[ASN][1000 genomes]
rs28563822	0.88[ASN][1000 genomes]
rs28599717	0.88[ASN][1000 genomes]
rs34247479	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35403923	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6571510	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66517744	0.88[ASN][1000 genomes]
rs67938997	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71427210	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7146346	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7146562	0.86[ASN][1000 genomes]
rs7147028	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7147285	0.86[ASN][1000 genomes]
rs7148036	0.86[ASN][1000 genomes]
rs7148808	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7151016	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7151681	0.86[ASN][1000 genomes]
rs7153398	0.86[ASN][1000 genomes]
rs8006624	0.86[EUR][1000 genomes]
rs8017400	0.88[ASN][1000 genomes]
rs8019207	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8020196	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8020197	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322889	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9322890	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322893	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322894	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9322899	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322901	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386382	chr14:32830429-32831802	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
2	chr14:32819200-32834200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:32822400-32834400	Weak transcription	Fetal Brain Female	brain
4	chr14:32828000-32835200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:32828200-32831000	Weak transcription	Brain Angular Gyrus	brain
6	chr14:32828200-32831800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:32828200-32833400	Weak transcription	Brain Germinal Matrix	brain
8	chr14:32829000-32831400	Weak transcription	Brain Hippocampus Middle	brain
9	chr14:32830400-32831000	Enhancers	Brain Substantia Nigra	brain
10	chr14:32830400-32831400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:32830400-32831600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr14:32830400-32835000	Enhancers	Brain Anterior Caudate	brain
13	chr14:32830600-32831000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr14:32830600-32831600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:32830600-32833400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:32830600-32840400	Enhancers	Brain Cingulate Gyrus	brain
17	chr14:32830600-32843800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr14:32830800-32831600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr14:32830800-32835600	Weak transcription	H1 Cell Line	embryonic stem cell

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