Variant report

Variant	rs11849373
Chromosome Location	chr14:32810562-32810563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32789689..32792160-chr14:32808622..32812879,3	MCF-7	breast:
2	chr14:32807865..32809719-chr14:32810240..32812970,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10129967	0.85[ASN][1000 genomes]
rs10135545	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10136452	0.86[ASN][1000 genomes]
rs10139496	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs10139567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140077	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10140526	0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs10143009	0.85[ASN][1000 genomes]
rs10143442	0.85[ASN][1000 genomes]
rs10145127	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10145282	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10150574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150657	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150670	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10151233	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10220343	0.85[ASN][1000 genomes]
rs10431651	0.94[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs11849501	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11849651	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12050081	0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12717220	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs12879177	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12883558	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12885011	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12889258	0.86[ASN][1000 genomes]
rs12896756	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs12897283	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17098722	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17098769	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17098849	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs17098889	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1998429	0.86[ASN][1000 genomes]
rs28451992	0.85[ASN][1000 genomes]
rs28563822	0.85[ASN][1000 genomes]
rs28599717	0.85[ASN][1000 genomes]
rs34247479	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35403923	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3784171	0.89[CEU][hapmap];0.81[AMR][1000 genomes]
rs58625904	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6571510	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66517744	0.85[ASN][1000 genomes]
rs67938997	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7146346	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7146562	0.86[ASN][1000 genomes]
rs7147028	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7147285	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7148036	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7148808	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7151016	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7151681	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7153398	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs717616	0.83[CEU][hapmap]
rs8006624	0.88[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8017400	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs8019207	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8020196	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8020197	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9285569	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9322889	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9322890	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322893	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322894	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9322899	0.94[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798445	chr14:32808361-32813639	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32788800-32811800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
3	chr14:32799400-32814600	Weak transcription	Left Ventricle	heart
4	chr14:32800200-32813200	Weak transcription	Esophagus	oesophagus
5	chr14:32800800-32811600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:32801000-32811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:32802600-32819000	Weak transcription	Fetal Brain Male	brain
8	chr14:32803200-32814000	Weak transcription	Fetal Intestine Small	intestine
9	chr14:32803200-32821600	Weak transcription	Fetal Brain Female	brain
10	chr14:32805800-32810800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:32806200-32811400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:32806200-32811800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:32806400-32811200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr14:32806400-32811200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:32806400-32811400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:32806400-32811600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr14:32806400-32811800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:32807200-32810800	Weak transcription	Brain Anterior Caudate	brain
19	chr14:32807200-32814600	Weak transcription	Aorta	Aorta
20	chr14:32809000-32810800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr14:32809000-32811000	Weak transcription	Brain Angular Gyrus	brain
22	chr14:32809000-32811000	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:32809200-32811400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr14:32809200-32813200	Weak transcription	Brain Germinal Matrix	brain
25	chr14:32809400-32814400	Weak transcription	HSMMtube	muscle
26	chr14:32809600-32815200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr14:32809800-32815600	Enhancers	NHEK	skin
28	chr14:32810000-32815600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:32810200-32811400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr14:32810400-32812400	Enhancers	Brain Substantia Nigra	brain
31	chr14:32810400-32815200	Enhancers	HMEC	breast

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