Variant report

Variant	rs17098722
Chromosome Location	chr14:32790557-32790558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32789689..32792160-chr14:32808622..32812879,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10135545	0.87[EUR][1000 genomes]
rs10139567	0.94[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];0.88[EUR][1000 genomes]
rs10140077	0.90[EUR][1000 genomes]
rs10145127	0.91[EUR][1000 genomes]
rs10145282	0.94[CEU][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs10150574	0.94[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.88[EUR][1000 genomes]
rs10150657	0.88[EUR][1000 genomes]
rs10150670	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs10151233	0.89[EUR][1000 genomes]
rs10431651	0.88[CEU][hapmap];1.00[MEX][hapmap]
rs11849373	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11849501	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs11849651	0.94[CEU][hapmap];0.83[GIH][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12879177	0.82[AMR][1000 genomes]
rs12883558	0.94[CEU][hapmap];0.87[GIH][hapmap];0.82[MEX][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12885011	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12897283	0.94[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17098769	0.94[CEU][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2383313	0.90[ASN][1000 genomes]
rs34247479	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35403923	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3784171	0.82[CEU][hapmap]
rs58625904	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6571510	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7146346	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7147028	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7148808	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7151016	0.94[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8006624	0.94[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.90[EUR][1000 genomes]
rs8019207	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8020196	0.86[EUR][1000 genomes]
rs8020197	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9322889	0.94[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9322890	0.91[EUR][1000 genomes]
rs9322893	0.80[EUR][1000 genomes]
rs9322894	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9322899	0.88[CEU][hapmap];1.00[MEX][hapmap]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32777400-32791400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:32781200-32790600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:32787800-32790800	Enhancers	Fetal Heart	heart
4	chr14:32788600-32791400	Weak transcription	Esophagus	oesophagus
5	chr14:32788800-32811800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr14:32789400-32791000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:32789600-32790600	Weak transcription	NHEK	skin
8	chr14:32789800-32790800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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