Variant report

Variant	rs10431652
Chromosome Location	chr14:32833489-32833490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32833195..32835953-chr14:32837356..32840001,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10129967	0.82[AMR][1000 genomes]
rs10132146	0.82[AMR][1000 genomes]
rs10134645	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10135655	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10136107	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10137128	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10139496	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs10140526	0.84[CEU][hapmap];0.80[AMR][1000 genomes]
rs10143009	0.82[AMR][1000 genomes]
rs10148659	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10150678	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10151749	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10151983	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10151990	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10220343	0.80[AMR][1000 genomes]
rs10483397	0.83[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.91[MKK][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12050081	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs12717220	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs12896756	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs17098849	0.88[CEU][hapmap]
rs17098889	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs1951688	0.83[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1951690	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1998429	0.82[AMR][1000 genomes]
rs28451992	0.82[AMR][1000 genomes]
rs28563822	0.82[AMR][1000 genomes]
rs28599717	0.82[AMR][1000 genomes]
rs3784167	0.84[CEU][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3784171	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs3784173	0.85[CEU][hapmap];0.91[CHB][hapmap];0.87[EUR][1000 genomes]
rs66517744	0.82[AMR][1000 genomes]
rs7141313	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7147285	0.88[CEU][hapmap]
rs7148036	0.88[CEU][hapmap]
rs7148165	0.87[EUR][1000 genomes]
rs7149335	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7151681	0.88[CEU][hapmap]
rs7153398	0.87[CEU][hapmap]
rs7160178	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs717616	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs8017400	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs8020364	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9285569	0.88[CEU][hapmap]
rs9322897	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9322898	0.96[CEU][hapmap];0.83[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32819200-32834200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:32822400-32834400	Weak transcription	Fetal Brain Female	brain
3	chr14:32828000-32835200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr14:32830400-32835000	Enhancers	Brain Anterior Caudate	brain
5	chr14:32830600-32840400	Enhancers	Brain Cingulate Gyrus	brain
6	chr14:32830600-32843800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:32830800-32835600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr14:32831000-32835400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:32831000-32838000	Enhancers	Brain Angular Gyrus	brain
10	chr14:32831400-32834400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:32831400-32835000	Enhancers	Brain Hippocampus Middle	brain
12	chr14:32831400-32835200	Enhancers	Brain Substantia Nigra	brain
13	chr14:32831600-32834200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr14:32831600-32834600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:32831600-32834800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:32831600-32835200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:32831800-32835200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr14:32832000-32834200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:32832200-32834200	Weak transcription	Right Ventricle	heart
20	chr14:32832200-32834800	Weak transcription	Left Ventricle	heart
21	chr14:32832600-32834400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:32833200-32834800	Weak transcription	Right Atrium	heart
23	chr14:32833400-32834400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:32833400-32836000	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links