Variant report

Variant	rs7149335
Chromosome Location	chr14:32814376-32814377
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10129967	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10132146	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10134645	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10135655	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10136107	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10136452	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10137128	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10137450	0.91[ASN][1000 genomes]
rs10139496	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10140526	0.84[CEU][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10143009	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10143442	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10148659	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10150678	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10151749	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10151983	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10151990	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10220343	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10431652	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10483397	0.88[ASW][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.86[MKK][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12050081	0.88[CEU][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12717220	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12889258	0.82[EUR][1000 genomes]
rs12891932	0.90[ASN][1000 genomes]
rs12896756	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17098849	0.88[CEU][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17098889	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1951688	0.94[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1951690	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1998429	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28451992	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28563822	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28599717	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28656103	0.94[ASN][1000 genomes]
rs3784167	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3784171	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs66517744	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7141313	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7146034	0.82[AMR][1000 genomes]
rs7146562	0.82[EUR][1000 genomes]
rs7146944	0.94[ASN][1000 genomes]
rs7147285	0.88[CEU][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7148036	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs7148165	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7151681	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs7153398	0.87[CEU][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7160178	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs717616	0.91[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8017400	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8020364	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9285569	0.88[CEU][hapmap]
rs9322897	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322898	0.83[ASW][hapmap];0.96[CEU][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32797200-32831600	Weak transcription	Right Atrium	heart
2	chr14:32799400-32814600	Weak transcription	Left Ventricle	heart
3	chr14:32802600-32819000	Weak transcription	Fetal Brain Male	brain
4	chr14:32803200-32821600	Weak transcription	Fetal Brain Female	brain
5	chr14:32807200-32814600	Weak transcription	Aorta	Aorta
6	chr14:32809400-32814400	Weak transcription	HSMMtube	muscle
7	chr14:32809600-32815200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:32809800-32815600	Enhancers	NHEK	skin
9	chr14:32810000-32815600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:32810400-32815200	Enhancers	HMEC	breast
11	chr14:32811000-32815000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:32811000-32815200	Enhancers	Brain Angular Gyrus	brain
13	chr14:32811000-32815400	Enhancers	Brain Hippocampus Middle	brain
14	chr14:32811400-32815400	Enhancers	Brain Cingulate Gyrus	brain
15	chr14:32811800-32814400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:32811800-32814600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr14:32812200-32814400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:32812200-32814600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr14:32812600-32814400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr14:32812600-32814400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:32812600-32814400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr14:32813400-32814400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr14:32813400-32814400	Weak transcription	Brain Substantia Nigra	brain
24	chr14:32813400-32814800	Weak transcription	Fetal Intestine Large	intestine
25	chr14:32813400-32815200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:32813600-32814600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr14:32813600-32814600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr14:32813800-32814400	Weak transcription	HepG2	liver
29	chr14:32813800-32814600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:32813800-32814800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:32814000-32814400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:32814000-32827800	Weak transcription	Brain Germinal Matrix	brain
33	chr14:32814200-32814800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr14:32814200-32815000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr14:32814200-32815000	Enhancers	Brain Anterior Caudate	brain
36	chr14:32814200-32815600	Enhancers	Cortex derived primary cultured neurospheres	brain

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