Variant report

Variant	rs10162251
Chromosome Location	chr13:97684235-97684236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10454520	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10454521	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10467249	0.92[EUR][1000 genomes]
rs1604445	0.92[EUR][1000 genomes]
rs16953709	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[EUR][1000 genomes]
rs16953795	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16953796	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16953798	0.89[AFR][1000 genomes]
rs16953867	1.00[GIH][hapmap]
rs28781694	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs55833408	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs56658652	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs57300347	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs59776675	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60668201	0.92[EUR][1000 genomes]
rs60711187	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60944822	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7323760	0.92[EUR][1000 genomes]
rs7333674	0.92[EUR][1000 genomes]
rs73550824	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73550827	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73550841	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7358813	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7358984	0.90[AFR][1000 genomes]
rs74107028	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7983307	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7987055	0.90[AFR][1000 genomes]
rs7988430	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7988579	0.90[AFR][1000 genomes]
rs7989049	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7993335	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7993976	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7994204	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7999025	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7999095	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs8001111	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300385	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9582094	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9584459	0.92[EUR][1000 genomes]
rs9584462	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9584464	0.92[EUR][1000 genomes]
rs9584465	0.92[EUR][1000 genomes]
rs9584504	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10162251	HS6ST3	cis	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97684000-97684400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr13:97684000-97684400	Enhancers	NHEK	skin
3	chr13:97684000-97685000	Enhancers	HUVEC	blood vessel

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