Variant report

Variant	rs59776675
Chromosome Location	chr13:97670791-97670792
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10162251	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10454520	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10454521	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12184892	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953795	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953796	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953798	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28781694	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55833408	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56205467	1.00[EUR][1000 genomes]
rs56414202	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56658652	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57300347	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59153260	1.00[EUR][1000 genomes]
rs60377207	1.00[EUR][1000 genomes]
rs60711187	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60944822	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7318927	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7325145	1.00[EUR][1000 genomes]
rs7333122	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7336344	1.00[EUR][1000 genomes]
rs7337147	1.00[EUR][1000 genomes]
rs7337202	1.00[EUR][1000 genomes]
rs73550824	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550827	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550841	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358813	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358841	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358984	0.88[AFR][1000 genomes]
rs74107015	1.00[EUR][1000 genomes]
rs74107017	1.00[EUR][1000 genomes]
rs74107019	1.00[EUR][1000 genomes]
rs74107022	1.00[EUR][1000 genomes]
rs74107024	1.00[EUR][1000 genomes]
rs74107026	1.00[EUR][1000 genomes]
rs74107028	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107102	1.00[EUR][1000 genomes]
rs74107315	1.00[EUR][1000 genomes]
rs74110103	1.00[EUR][1000 genomes]
rs7983307	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7987055	0.88[AFR][1000 genomes]
rs7988430	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7988579	0.88[AFR][1000 genomes]
rs7989049	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7993976	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7994204	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7999025	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7999095	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8001111	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs8001865	1.00[EUR][1000 genomes]
rs9300385	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582108	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97664200-97673000	Weak transcription	Fetal Intestine Large	intestine
2	chr13:97670200-97670800	Enhancers	Adipose Nuclei	Adipose
3	chr13:97670200-97671000	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr13:97670400-97670800	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr13:97670400-97670800	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr13:97670400-97670800	Bivalent Enhancer	Liver	Liver
7	chr13:97670400-97670800	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr13:97670400-97670800	Active TSS	Colon Smooth Muscle	Colon
9	chr13:97670400-97671000	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr13:97670400-97671000	Enhancers	Fetal Muscle Leg	muscle
11	chr13:97670400-97671000	Enhancers	Placenta	Placenta
12	chr13:97670400-97671200	Enhancers	Fetal Heart	heart
13	chr13:97670400-97671400	Enhancers	Placenta Amnion	Placenta Amnion
14	chr13:97670600-97670800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr13:97670600-97670800	Active TSS	H1 Cell Line	embryonic stem cell
16	chr13:97670600-97670800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr13:97670600-97670800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
18	chr13:97670600-97670800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:97670600-97670800	Flanking Active TSS	Aorta	Aorta
20	chr13:97670600-97670800	Flanking Active TSS	Brain Anterior Caudate	brain
21	chr13:97670600-97670800	Enhancers	Brain Cingulate Gyrus	brain
22	chr13:97670600-97670800	Flanking Active TSS	Brain Substantia Nigra	brain
23	chr13:97670600-97670800	Enhancers	Fetal Brain Female	brain
24	chr13:97670600-97670800	Bivalent Enhancer	Stomach Mucosa	stomach
25	chr13:97670600-97670800	Bivalent Enhancer	HUVEC	blood vessel
26	chr13:97670600-97671000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr13:97670600-97671000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr13:97670600-97671000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr13:97670600-97671000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr13:97670600-97671000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr13:97670600-97671000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr13:97670600-97671000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr13:97670600-97671000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr13:97670600-97671000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr13:97670600-97671000	Enhancers	Fetal Brain Male	brain
36	chr13:97670600-97671000	Enhancers	Psoas Muscle	Psoas
37	chr13:97670600-97671000	Enhancers	Rectal Smooth Muscle	rectum
38	chr13:97670600-97671000	Enhancers	HMEC	breast
39	chr13:97670600-97671000	Enhancers	HSMMtube	muscle
40	chr13:97670600-97671000	Bivalent Enhancer	NHDF-Ad	bronchial
41	chr13:97670600-97671000	Bivalent Enhancer	NHLF	lung
42	chr13:97670600-97671200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr13:97670600-97671200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr13:97670600-97671200	Enhancers	Fetal Muscle Trunk	muscle
45	chr13:97670600-97672000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr13:97670600-97672200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr13:97670600-97673800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links