Variant report

Variant	rs7358841
Chromosome Location	chr13:97680820-97680821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97474587..97475744-chr13:97680692..97681384,3	MCF-7	breast:
2	chr13:97469481..97470002-chr13:97680693..97681261,2	MCF-7	breast:
3	chr13:97670022..97670768-chr13:97680648..97681197,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10454520	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10454521	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12184892	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953795	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953796	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953798	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28781694	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55833408	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56205467	1.00[EUR][1000 genomes]
rs56414202	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56658652	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57300347	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59153260	1.00[EUR][1000 genomes]
rs59776675	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60377207	1.00[EUR][1000 genomes]
rs60944822	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7318927	1.00[EUR][1000 genomes]
rs7325145	1.00[EUR][1000 genomes]
rs7333122	1.00[EUR][1000 genomes]
rs7336344	1.00[EUR][1000 genomes]
rs7337147	1.00[EUR][1000 genomes]
rs7337202	1.00[EUR][1000 genomes]
rs73550824	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550827	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550841	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358813	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358984	0.81[AFR][1000 genomes]
rs74107015	1.00[EUR][1000 genomes]
rs74107017	1.00[EUR][1000 genomes]
rs74107019	1.00[EUR][1000 genomes]
rs74107022	1.00[EUR][1000 genomes]
rs74107024	1.00[EUR][1000 genomes]
rs74107026	1.00[EUR][1000 genomes]
rs74107028	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107102	1.00[EUR][1000 genomes]
rs74107315	1.00[EUR][1000 genomes]
rs74110103	1.00[EUR][1000 genomes]
rs7983307	0.93[AMR][1000 genomes]
rs7987055	0.81[AFR][1000 genomes]
rs7988430	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7988579	0.81[AFR][1000 genomes]
rs7989049	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7993976	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7994204	0.93[AMR][1000 genomes]
rs7999025	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7999095	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs8001865	1.00[EUR][1000 genomes]
rs9300385	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582108	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97679800-97683200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:97679800-97683400	Weak transcription	Adipose Nuclei	Adipose
3	chr13:97680000-97684000	Weak transcription	HUVEC	blood vessel
4	chr13:97680600-97681000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:97680600-97681000	Enhancers	Fetal Brain Male	brain
6	chr13:97680800-97681000	Enhancers	Fetal Lung	lung
7	chr13:97680800-97681200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr13:97680800-97681200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:97680800-97681200	Enhancers	Liver	Liver
10	chr13:97680800-97681200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr13:97680800-97681400	Enhancers	Brain Anterior Caudate	brain
12	chr13:97680800-97681400	Enhancers	Brain Cingulate Gyrus	brain
13	chr13:97680800-97681400	Active TSS	Brain Hippocampus Middle	brain

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