Variant report

Variant	rs7333122
Chromosome Location	chr13:97659431-97659432
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97658158..97660143-chr13:97663859..97666156,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10454520	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10454521	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12184892	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953709	1.00[GIH][hapmap]
rs16953795	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953796	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953798	1.00[EUR][1000 genomes]
rs16953867	1.00[GIH][hapmap]
rs28781694	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55833408	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56205467	1.00[EUR][1000 genomes]
rs56414202	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56658652	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57300347	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59153260	1.00[EUR][1000 genomes]
rs59776675	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60377207	1.00[EUR][1000 genomes]
rs60944822	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7318927	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7325145	1.00[EUR][1000 genomes]
rs7336344	1.00[EUR][1000 genomes]
rs7337147	1.00[EUR][1000 genomes]
rs7337202	1.00[EUR][1000 genomes]
rs73550824	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550827	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550841	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358813	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358841	1.00[EUR][1000 genomes]
rs74107015	1.00[EUR][1000 genomes]
rs74107017	1.00[EUR][1000 genomes]
rs74107019	1.00[EUR][1000 genomes]
rs74107022	1.00[EUR][1000 genomes]
rs74107024	1.00[EUR][1000 genomes]
rs74107026	1.00[EUR][1000 genomes]
rs74107028	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107102	1.00[EUR][1000 genomes]
rs74107315	1.00[EUR][1000 genomes]
rs74110103	1.00[EUR][1000 genomes]
rs7983307	0.84[AMR][1000 genomes]
rs7988430	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7989049	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7993976	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7994204	0.84[AMR][1000 genomes]
rs7999025	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7999095	0.84[AMR][1000 genomes]
rs8001865	1.00[EUR][1000 genomes]
rs9300385	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582108	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7333122	HS6ST3	cis	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97655400-97660400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:97658400-97660200	Weak transcription	Fetal Intestine Large	intestine
3	chr13:97658600-97663800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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