Variant report

Variant	rs16953798
Chromosome Location	chr13:97671106-97671107
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10162251	0.89[AFR][1000 genomes]
rs10454520	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10454521	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12184892	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953795	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953796	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28781694	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55833408	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56205467	1.00[EUR][1000 genomes]
rs56414202	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56658652	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57300347	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59153260	1.00[EUR][1000 genomes]
rs59776675	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60377207	1.00[EUR][1000 genomes]
rs60711187	0.87[AFR][1000 genomes]
rs60944822	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7318927	1.00[EUR][1000 genomes]
rs7325145	1.00[EUR][1000 genomes]
rs7333122	1.00[EUR][1000 genomes]
rs7336344	1.00[EUR][1000 genomes]
rs7337147	1.00[EUR][1000 genomes]
rs7337202	1.00[EUR][1000 genomes]
rs73550824	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550827	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550841	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358813	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358841	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358984	0.91[AFR][1000 genomes]
rs74107015	1.00[EUR][1000 genomes]
rs74107017	1.00[EUR][1000 genomes]
rs74107019	1.00[EUR][1000 genomes]
rs74107022	1.00[EUR][1000 genomes]
rs74107024	1.00[EUR][1000 genomes]
rs74107026	1.00[EUR][1000 genomes]
rs74107028	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107102	1.00[EUR][1000 genomes]
rs74107315	1.00[EUR][1000 genomes]
rs74110103	1.00[EUR][1000 genomes]
rs7983307	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7987055	0.91[AFR][1000 genomes]
rs7988430	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7988579	0.91[AFR][1000 genomes]
rs7989049	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7993976	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7994204	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7999025	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7999095	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs8001111	0.86[AFR][1000 genomes]
rs8001865	1.00[EUR][1000 genomes]
rs9300385	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582108	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97664200-97673000	Weak transcription	Fetal Intestine Large	intestine
2	chr13:97670400-97671200	Enhancers	Fetal Heart	heart
3	chr13:97670400-97671400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr13:97670600-97671200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:97670600-97671200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:97670600-97671200	Enhancers	Fetal Muscle Trunk	muscle
7	chr13:97670600-97672000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:97670600-97672200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:97670600-97673800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr13:97670800-97678200	Weak transcription	Adipose Nuclei	Adipose
11	chr13:97671000-97671200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr13:97671000-97671200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr13:97671000-97671200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr13:97671000-97671200	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr13:97671000-97671400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr13:97671000-97672200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:97671000-97672400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr13:97671000-97678200	Weak transcription	Fetal Brain Male	brain

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