Variant report

Variant	rs7999025
Chromosome Location	chr13:97670524-97670525
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97670022..97670768-chr13:97680648..97681197,2	MCF-7	breast:
2	chr13:97670114..97670705-chr13:97996510..97997402,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10162251	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10454520	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10454521	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12184892	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953798	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28781694	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55833408	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56205467	1.00[EUR][1000 genomes]
rs56414202	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56658652	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57300347	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59153260	1.00[EUR][1000 genomes]
rs59776675	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60377207	1.00[EUR][1000 genomes]
rs60711187	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60944822	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7318927	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7325145	1.00[EUR][1000 genomes]
rs7333122	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7336344	1.00[EUR][1000 genomes]
rs7337147	1.00[EUR][1000 genomes]
rs7337202	1.00[EUR][1000 genomes]
rs73550824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550827	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550841	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358813	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358841	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358984	0.91[AFR][1000 genomes]
rs74107015	1.00[EUR][1000 genomes]
rs74107017	1.00[EUR][1000 genomes]
rs74107019	1.00[EUR][1000 genomes]
rs74107022	1.00[EUR][1000 genomes]
rs74107024	1.00[EUR][1000 genomes]
rs74107026	1.00[EUR][1000 genomes]
rs74107028	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107102	1.00[EUR][1000 genomes]
rs74107315	1.00[EUR][1000 genomes]
rs74110103	1.00[EUR][1000 genomes]
rs7983307	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7987055	0.91[AFR][1000 genomes]
rs7988430	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7988579	0.91[AFR][1000 genomes]
rs7989049	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7993976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7994204	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7999095	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8001111	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs8001865	1.00[EUR][1000 genomes]
rs9300385	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582108	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97664200-97670600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:97664200-97673000	Weak transcription	Fetal Intestine Large	intestine
3	chr13:97668400-97670600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:97668800-97670600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:97670200-97670600	Enhancers	Brain Substantia Nigra	brain
6	chr13:97670200-97670800	Enhancers	Adipose Nuclei	Adipose
7	chr13:97670200-97671000	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr13:97670400-97670600	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr13:97670400-97670600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
10	chr13:97670400-97670600	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr13:97670400-97670600	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr13:97670400-97670600	Active TSS	Aorta	Aorta
13	chr13:97670400-97670600	Active TSS	Brain Anterior Caudate	brain
14	chr13:97670400-97670800	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr13:97670400-97670800	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr13:97670400-97670800	Bivalent Enhancer	Liver	Liver
17	chr13:97670400-97670800	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr13:97670400-97670800	Active TSS	Colon Smooth Muscle	Colon
19	chr13:97670400-97671000	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr13:97670400-97671000	Enhancers	Fetal Muscle Leg	muscle
21	chr13:97670400-97671000	Enhancers	Placenta	Placenta
22	chr13:97670400-97671200	Enhancers	Fetal Heart	heart
23	chr13:97670400-97671400	Enhancers	Placenta Amnion	Placenta Amnion

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