Variant report

Variant	rs55833408
Chromosome Location	chr13:97674454-97674455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10162251	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10454520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10454521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12184892	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953795	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953796	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953798	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28781694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56205467	1.00[EUR][1000 genomes]
rs56414202	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56658652	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57300347	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59153260	1.00[EUR][1000 genomes]
rs59776675	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60377207	1.00[EUR][1000 genomes]
rs60711187	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60944822	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7318927	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7325145	1.00[EUR][1000 genomes]
rs7333122	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7336344	1.00[EUR][1000 genomes]
rs7337147	1.00[EUR][1000 genomes]
rs7337202	1.00[EUR][1000 genomes]
rs73550824	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550827	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358841	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358984	0.95[AFR][1000 genomes]
rs74107015	1.00[EUR][1000 genomes]
rs74107017	1.00[EUR][1000 genomes]
rs74107019	1.00[EUR][1000 genomes]
rs74107022	1.00[EUR][1000 genomes]
rs74107024	1.00[EUR][1000 genomes]
rs74107026	1.00[EUR][1000 genomes]
rs74107028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107102	1.00[EUR][1000 genomes]
rs74107315	1.00[EUR][1000 genomes]
rs74110103	1.00[EUR][1000 genomes]
rs7983307	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7987055	0.95[AFR][1000 genomes]
rs7988430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7988579	0.95[AFR][1000 genomes]
rs7989049	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7993976	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7994204	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7999025	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7999095	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8001111	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs8001865	1.00[EUR][1000 genomes]
rs9300385	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582108	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97670800-97678200	Weak transcription	Adipose Nuclei	Adipose
2	chr13:97671000-97678200	Weak transcription	Fetal Brain Male	brain
3	chr13:97673200-97674600	Enhancers	Duodenum Mucosa	Duodenum
4	chr13:97673800-97678400	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links