Variant report

Variant	rs74107022
Chromosome Location	chr13:97674176-97674177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97663695..97665285-chr13:97672153..97674376,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10454520	1.00[EUR][1000 genomes]
rs10454521	1.00[EUR][1000 genomes]
rs12184892	1.00[EUR][1000 genomes]
rs16953795	1.00[EUR][1000 genomes]
rs16953796	1.00[EUR][1000 genomes]
rs16953798	1.00[EUR][1000 genomes]
rs28781694	1.00[EUR][1000 genomes]
rs55833408	1.00[EUR][1000 genomes]
rs56205467	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56414202	1.00[EUR][1000 genomes]
rs56658652	1.00[EUR][1000 genomes]
rs57300347	1.00[EUR][1000 genomes]
rs59153260	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59776675	1.00[EUR][1000 genomes]
rs60377207	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60944822	1.00[EUR][1000 genomes]
rs7318927	1.00[EUR][1000 genomes]
rs7325145	1.00[EUR][1000 genomes]
rs7333122	1.00[EUR][1000 genomes]
rs7336344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7337147	1.00[EUR][1000 genomes]
rs7337202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550824	1.00[EUR][1000 genomes]
rs73550827	1.00[EUR][1000 genomes]
rs73550841	1.00[EUR][1000 genomes]
rs7358813	1.00[EUR][1000 genomes]
rs7358841	1.00[EUR][1000 genomes]
rs74107015	1.00[EUR][1000 genomes]
rs74107017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107024	1.00[EUR][1000 genomes]
rs74107026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107028	1.00[EUR][1000 genomes]
rs74107102	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74110103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7988430	1.00[EUR][1000 genomes]
rs7989049	1.00[EUR][1000 genomes]
rs7993976	1.00[EUR][1000 genomes]
rs7999025	1.00[EUR][1000 genomes]
rs8001865	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300385	1.00[EUR][1000 genomes]
rs9582108	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97670800-97678200	Weak transcription	Adipose Nuclei	Adipose
2	chr13:97671000-97678200	Weak transcription	Fetal Brain Male	brain
3	chr13:97672400-97674400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:97673000-97674200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr13:97673000-97674400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:97673000-97674400	Enhancers	Fetal Intestine Large	intestine
7	chr13:97673200-97674200	Enhancers	Fetal Intestine Small	intestine
8	chr13:97673200-97674600	Enhancers	Duodenum Mucosa	Duodenum
9	chr13:97673800-97678400	Weak transcription	HUVEC	blood vessel

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