Variant report

Variant	rs7358984
Chromosome Location	chr13:97678296-97678297
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97677091..97678619-chr13:97684486..97686686,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10162251	0.90[AFR][1000 genomes]
rs10454520	0.95[AFR][1000 genomes]
rs10454521	0.95[AFR][1000 genomes]
rs12586035	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1501858	0.80[AMR][1000 genomes]
rs16953795	0.91[AFR][1000 genomes]
rs16953796	0.91[AFR][1000 genomes]
rs16953798	0.91[AFR][1000 genomes]
rs17235468	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17235489	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17301243	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1847022	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28781694	0.95[AFR][1000 genomes]
rs55833408	0.95[AFR][1000 genomes]
rs56658652	0.92[AFR][1000 genomes]
rs57300347	0.87[AFR][1000 genomes]
rs59776675	0.88[AFR][1000 genomes]
rs60711187	0.88[AFR][1000 genomes]
rs60944822	0.94[AFR][1000 genomes]
rs72485616	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7319368	0.88[ASN][1000 genomes]
rs7324834	0.91[ASN][1000 genomes]
rs73550824	0.91[AFR][1000 genomes]
rs73550827	0.91[AFR][1000 genomes]
rs73550841	0.95[AFR][1000 genomes]
rs7358813	0.95[AFR][1000 genomes]
rs7358841	0.81[AFR][1000 genomes]
rs74107028	0.94[AFR][1000 genomes]
rs7982736	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7983307	0.86[AFR][1000 genomes]
rs7983750	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7987055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7988430	0.95[AFR][1000 genomes]
rs7988579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7989049	0.94[AFR][1000 genomes]
rs7990972	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7993976	0.91[AFR][1000 genomes]
rs7994204	0.87[AFR][1000 genomes]
rs7999025	0.91[AFR][1000 genomes]
rs7999095	0.91[AFR][1000 genomes]
rs8001111	0.86[AFR][1000 genomes]
rs9300385	0.90[AFR][1000 genomes]
rs9554379	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9554380	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9554381	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9554382	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9554383	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556654	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9556658	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556671	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556675	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9582103	0.80[AMR][1000 genomes]
rs9584486	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9634495	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97673800-97678400	Weak transcription	HUVEC	blood vessel
2	chr13:97676600-97679000	Weak transcription	Hela-S3	cervix
3	chr13:97678000-97678800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:97678200-97678400	Enhancers	Fetal Brain Male	brain
5	chr13:97678200-97679000	Enhancers	Adipose Nuclei	Adipose

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