Variant report
| Variant | rs7319368 |
|---|---|
| Chromosome Location | chr13:97733272-97733273 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs12586035 | 0.84[ASN][1000 genomes] |
| rs1501858 | 0.93[EUR][1000 genomes] |
| rs17301243 | 0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1847022 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1933010 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1999833 | 0.84[AFR][1000 genomes] |
| rs4001310 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72485616 | 0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7324834 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7325474 | 0.85[AFR][1000 genomes] |
| rs7358984 | 0.88[ASN][1000 genomes] |
| rs7982736 | 0.95[ASN][1000 genomes] |
| rs7983750 | 0.95[ASN][1000 genomes] |
| rs7987055 | 0.86[ASN][1000 genomes] |
| rs7988579 | 0.86[ASN][1000 genomes] |
| rs7990972 | 0.95[ASN][1000 genomes] |
| rs7998889 | 0.82[YRI][hapmap] |
| rs9554380 | 0.81[ASN][1000 genomes] |
| rs9554381 | 0.88[ASN][1000 genomes] |
| rs9554382 | 0.88[ASN][1000 genomes] |
| rs9554383 | 0.88[ASN][1000 genomes] |
| rs9556654 | 0.81[ASN][1000 genomes] |
| rs9556658 | 0.87[ASN][1000 genomes] |
| rs9556671 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9556675 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9582103 | 0.93[EUR][1000 genomes] |
| rs9584486 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9584489 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9634495 | 0.86[ASN][1000 genomes] |
| rs992706 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832693 | chr13:97594845-97777481 | Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:97730800-97734200 | Weak transcription | Primary monocytes fromperipheralblood | blood |
| 2 | chr13:97730800-97734200 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
