Variant report

Variant	rs9584486
Chromosome Location	chr13:97719995-97719996
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12586035	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1501858	0.80[EUR][1000 genomes]
rs17235468	0.80[ASN][1000 genomes]
rs17235489	0.81[EUR][1000 genomes]
rs17301243	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1847022	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933010	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1999833	0.91[AFR][1000 genomes]
rs4001310	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72485616	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7319368	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7324834	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7325474	0.86[YRI][hapmap];0.93[AFR][1000 genomes]
rs7358984	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7982736	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983750	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987055	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7988579	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7990972	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7998889	0.96[YRI][hapmap]
rs9554380	0.86[ASN][1000 genomes]
rs9554381	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9554382	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9554383	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556654	0.86[ASN][1000 genomes]
rs9556658	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9556671	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556675	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9582103	0.80[EUR][1000 genomes]
rs9584489	0.81[EUR][1000 genomes]
rs9634495	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs992706	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97719200-97720200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:97719400-97720600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:97719600-97720400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr13:97719600-97720400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr13:97719600-97721000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:97719800-97720000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr13:97719800-97720000	Bivalent Enhancer	NHDF-Ad	bronchial
8	chr13:97719800-97720600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr13:97719800-97720600	Enhancers	NH-A	brain
10	chr13:97719800-97721200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr13:97719800-97721200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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