Variant report

Variant	rs17301243
Chromosome Location	chr13:97729476-97729477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12586035	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17235468	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17235489	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1847022	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1933010	0.85[EUR][1000 genomes]
rs4001310	0.85[EUR][1000 genomes]
rs72485616	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7319368	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7324834	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7358984	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7982736	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7983750	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7987055	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7988579	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7990972	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9554379	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9554380	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9554381	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9554382	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9554383	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9556654	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9556658	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9556671	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9584486	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9634495	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97729200-97729600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:97729200-97729600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr13:97729200-97729600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr13:97729200-97729600	Active TSS	Adipose Nuclei	Adipose
5	chr13:97729200-97729600	Active TSS	Placenta	Placenta
6	chr13:97729200-97729600	Active TSS	Right Ventricle	heart
7	chr13:97729200-97729600	Bivalent/Poised TSS	HUVEC	blood vessel
8	chr13:97729200-97729600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr13:97729200-97729800	Active TSS	Primary hematopoietic stem cells	blood
10	chr13:97729200-97729800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr13:97729200-97729800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr13:97729200-97730000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
13	chr13:97729400-97729800	Active TSS	Primary B cells from cord blood	blood

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