Variant report

Variant	rs7983750
Chromosome Location	chr13:97719090-97719091
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12586035	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1501858	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17235468	0.80[ASN][1000 genomes]
rs17301243	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1847022	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72485616	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7319368	0.95[ASN][1000 genomes]
rs7324834	0.99[ASN][1000 genomes]
rs7326505	0.84[AFR][1000 genomes]
rs7358984	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7982736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987055	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7988579	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7990972	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7993335	0.82[AFR][1000 genomes]
rs9554380	0.86[ASN][1000 genomes]
rs9554381	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9554382	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9554383	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556654	0.86[ASN][1000 genomes]
rs9556658	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9556671	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556675	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9582103	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9584470	0.87[AFR][1000 genomes]
rs9584486	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584489	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9634495	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs992706	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7983750	MGST2	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97718600-97719200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:97718800-97719200	Enhancers	Monocytes-CD14+_RO01746	blood

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