Variant report

Variant	rs1501858
Chromosome Location	chr13:97732578-97732579
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1847022	0.80[EUR][1000 genomes]
rs1933010	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4001310	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7319368	0.93[EUR][1000 genomes]
rs7324834	0.93[EUR][1000 genomes]
rs7326505	0.81[AFR][1000 genomes]
rs7358984	0.80[AMR][1000 genomes]
rs7982736	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7983750	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7987055	0.80[AMR][1000 genomes]
rs7988579	0.80[AMR][1000 genomes]
rs7990972	0.87[EUR][1000 genomes]
rs7993335	0.83[AFR][1000 genomes]
rs9556658	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9582103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584470	0.84[AFR][1000 genomes]
rs9584486	0.80[EUR][1000 genomes]
rs9584489	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs992706	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97730800-97734200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr13:97730800-97734200	Weak transcription	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links