Variant report

Variant	rs1933010
Chromosome Location	chr13:97732742-97732743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1501858	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301243	0.85[EUR][1000 genomes]
rs1847022	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4001310	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72485616	0.80[EUR][1000 genomes]
rs7319368	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7324834	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9556671	0.85[EUR][1000 genomes]
rs9556675	0.85[EUR][1000 genomes]
rs9582103	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584486	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9584489	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs992706	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97730800-97734200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr13:97730800-97734200	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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