Variant report

Variant	rs1847022
Chromosome Location	chr13:97720443-97720444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12586035	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1501858	0.80[EUR][1000 genomes]
rs17235468	0.80[ASN][1000 genomes]
rs17235489	0.81[EUR][1000 genomes]
rs17301243	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1933010	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4001310	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72485616	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7319368	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7324834	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7358984	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7982736	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983750	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987055	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7988579	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7990972	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9554380	0.86[ASN][1000 genomes]
rs9554381	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9554382	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9554383	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556654	0.86[ASN][1000 genomes]
rs9556658	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9556671	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556675	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9582103	0.80[EUR][1000 genomes]
rs9584486	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584489	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9634495	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs992706	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97719400-97720600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:97719600-97721000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr13:97719800-97720600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr13:97719800-97720600	Enhancers	NH-A	brain
5	chr13:97719800-97721200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr13:97719800-97721200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:97720000-97721000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr13:97720000-97721200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:97720000-97721600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr13:97720200-97721000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:97720200-97721200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr13:97720200-97721400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr13:97720200-97721400	Enhancers	Fetal Lung	lung
14	chr13:97720200-97721600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr13:97720200-97721800	Enhancers	Fetal Stomach	stomach
16	chr13:97720400-97721000	Enhancers	Fetal Muscle Leg	muscle
17	chr13:97720400-97722000	Bivalent Enhancer	Stomach Smooth Muscle	stomach

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