Variant report

Variant	rs17235468
Chromosome Location	chr13:97649581-97649582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97641931..97645127-chr13:97647697..97650647,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HS6ST3-3	chr13:97646606-97649813	NONHSAT034817

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12586035	0.82[EUR][1000 genomes]
rs17235489	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17301243	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1847022	0.80[ASN][1000 genomes]
rs72485616	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7358984	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7982736	0.80[ASN][1000 genomes]
rs7983750	0.80[ASN][1000 genomes]
rs7987055	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7988579	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9554379	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9554380	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9554381	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9554382	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9554383	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9556654	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556658	0.85[ASN][1000 genomes]
rs9556671	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9556675	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9584486	0.80[ASN][1000 genomes]
rs9634495	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97647200-97653400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:97647600-97653400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:97648000-97649600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr13:97648000-97651000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr13:97649400-97650400	Weak transcription	Primary monocytes fromperipheralblood	blood

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