Variant report

Variant	rs17235489
Chromosome Location	chr13:97667418-97667419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12586035	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17235468	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17301243	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1847022	0.81[EUR][1000 genomes]
rs72485616	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7358984	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7987055	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7988579	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9554379	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9554380	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9554381	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9554382	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9554383	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9556654	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556658	0.85[ASN][1000 genomes]
rs9556671	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9556675	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9584486	0.81[EUR][1000 genomes]
rs9634495	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97664200-97670600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:97664200-97673000	Weak transcription	Fetal Intestine Large	intestine
3	chr13:97664600-97670400	Weak transcription	Placenta	Placenta
4	chr13:97667200-97668600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr13:97667400-97668000	Enhancers	Primary B cells from cord blood	blood
6	chr13:97667400-97668600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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