Variant report

Variant	rs9556658
Chromosome Location	chr13:97678251-97678252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97677091..97678619-chr13:97684486..97686686,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12586035	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1501858	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17235468	0.85[ASN][1000 genomes]
rs17235489	0.85[ASN][1000 genomes]
rs17301243	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1847022	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72485616	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7319368	0.87[ASN][1000 genomes]
rs7324834	0.91[ASN][1000 genomes]
rs7326505	0.90[AFR][1000 genomes]
rs7358984	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7982736	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7983750	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7987055	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7988579	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7990972	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9554379	0.83[ASN][1000 genomes]
rs9554380	0.92[ASN][1000 genomes]
rs9554381	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9554382	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9554383	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556654	0.92[ASN][1000 genomes]
rs9556671	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9556675	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9582103	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9584470	0.94[AFR][1000 genomes]
rs9584486	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9634495	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs992706	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9556658	MGST2	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97673800-97678400	Weak transcription	HUVEC	blood vessel
2	chr13:97676600-97679000	Weak transcription	Hela-S3	cervix
3	chr13:97678000-97678800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:97678200-97678400	Enhancers	Fetal Brain Male	brain
5	chr13:97678200-97679000	Enhancers	Adipose Nuclei	Adipose

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