Variant report

Variant	rs9556671
Chromosome Location	chr13:97711120-97711121
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12586035	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17235468	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17235489	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17301243	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17301334	1.00[ASW][hapmap]
rs1847022	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933010	0.85[EUR][1000 genomes]
rs4001310	0.85[EUR][1000 genomes]
rs72485616	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7319368	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7324834	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7358984	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7982736	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983750	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987055	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7988579	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7990972	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9554379	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9554380	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9554381	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9554382	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9554383	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556654	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9556658	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9556675	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9584486	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634495	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97708400-97711600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:97710000-97711600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:97710400-97711800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr13:97710800-97711800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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