Variant report

Variant	rs10226764
Chromosome Location	chr7:27472274-27472275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11761572	0.86[EUR][1000 genomes]
rs11764246	0.85[EUR][1000 genomes]
rs11764603	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11767850	0.86[EUR][1000 genomes]
rs11768077	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11768223	0.83[EUR][1000 genomes]
rs11768908	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11770627	0.83[EUR][1000 genomes]
rs11772558	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11773352	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11773710	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17429684	0.80[EUR][1000 genomes]
rs17429691	0.86[EUR][1000 genomes]
rs17429698	0.86[EUR][1000 genomes]
rs17429719	0.86[EUR][1000 genomes]
rs17429726	0.86[EUR][1000 genomes]
rs17439312	0.86[EUR][1000 genomes]
rs17439333	0.86[EUR][1000 genomes]
rs62454767	0.91[EUR][1000 genomes]
rs62454768	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454788	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454791	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454792	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454793	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454824	0.85[EUR][1000 genomes]
rs6965319	0.86[EUR][1000 genomes]
rs6965852	0.85[EUR][1000 genomes]
rs6977425	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27466200-27473800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:27469600-27472800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:27469800-27473000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:27470000-27472800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:27470800-27473200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:27471600-27474200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr7:27472000-27472400	Enhancers	Brain Germinal Matrix	brain
8	chr7:27472000-27473200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:27472000-27474200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:27472000-27474400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:27472000-27475200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:27472200-27473200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:27472200-27473800	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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