Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27462153..27463834-chr7:27472462..27475213,2	MCF-7	breast:
2	chr7:27468218..27471547-chr7:27472130..27475962,5	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10226764	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11761572	0.85[EUR][1000 genomes]
rs11764246	0.84[EUR][1000 genomes]
rs11764603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11767850	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11768077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11768223	0.82[EUR][1000 genomes]
rs11768908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11770627	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11772558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11773352	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11773710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17429691	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17429698	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17429719	0.85[EUR][1000 genomes]
rs17429726	0.85[EUR][1000 genomes]
rs17439312	0.85[EUR][1000 genomes]
rs17439333	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62454767	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62454768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454824	0.86[EUR][1000 genomes]
rs6965319	0.85[EUR][1000 genomes]
rs6965852	0.84[EUR][1000 genomes]
rs6977425	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27471600-27474200	Enhancers	H1 Cell Line	embryonic stem cell
2	chr7:27472000-27474200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:27472000-27474400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:27472000-27475200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:27472800-27474800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:27472800-27475200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:27473000-27474000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:27473000-27474600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:27473000-27475200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:27473200-27474200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr7:27473200-27474600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:27473600-27474600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:27473600-27474800	Weak transcription	Brain Germinal Matrix	brain
14	chr7:27473800-27474000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:27473800-27474000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:27473800-27474000	Enhancers	Spleen	Spleen
17	chr7:27473800-27474200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:27473800-27474400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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