Variant report

Variant	rs11768908
Chromosome Location	chr7:27491289-27491290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10226764	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11761572	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs11764246	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs11764603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11767850	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11768077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11768223	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs11770627	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11772558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11773352	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11773710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17429684	0.94[CEU][hapmap]
rs17429691	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17429698	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17429719	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs17429726	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs17439312	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs17439333	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62454767	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62454768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454824	0.86[EUR][1000 genomes]
rs6965319	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs6965852	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs6977425	0.93[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27487200-27493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:27488800-27493400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:27489400-27493600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:27490800-27491800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:27491200-27491400	Enhancers	Adipose Nuclei	Adipose

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