Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:27386607..27388873-chr7:27463888..27465828,2	MCF-7	breast:
2	chr7:27275263..27277588-chr7:27463038..27465057,2	MCF-7	breast:
3	chr7:27459213..27461483-chr7:27463058..27464839,2	MCF-7	breast:
4	chr7:27383310..27384917-chr7:27463125..27464669,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10226764	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11761572	0.86[EUR][1000 genomes]
rs11764246	0.85[EUR][1000 genomes]
rs11764603	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11767850	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11768077	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11768223	0.83[EUR][1000 genomes]
rs11768908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11770627	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11772558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11773352	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11773710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17429684	0.80[EUR][1000 genomes]
rs17429691	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17429698	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17429719	0.86[EUR][1000 genomes]
rs17429726	0.86[EUR][1000 genomes]
rs17439312	0.86[EUR][1000 genomes]
rs17439333	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62454767	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62454788	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454793	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454824	0.85[EUR][1000 genomes]
rs6965319	0.86[EUR][1000 genomes]
rs6965852	0.85[EUR][1000 genomes]
rs6977425	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27459200-27464600	Weak transcription	Pancreas	Pancrea
2	chr7:27461800-27464600	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr7:27461800-27465200	Enhancers	Stomach Mucosa	stomach
4	chr7:27462400-27464600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:27462600-27464600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:27462800-27464800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:27462800-27464800	Enhancers	HMEC	breast
8	chr7:27462800-27464800	Enhancers	NHEK	skin
9	chr7:27463200-27465000	Enhancers	Duodenum Mucosa	Duodenum
10	chr7:27463400-27465000	Enhancers	A549	lung
11	chr7:27463400-27471800	Weak transcription	Spleen	Spleen
12	chr7:27463600-27464800	Enhancers	Fetal Intestine Small	intestine
13	chr7:27463800-27464200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr7:27463800-27466000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:27464000-27464400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr7:27464000-27464600	Enhancers	HUVEC	blood vessel
17	chr7:27464000-27464800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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