Variant report

Variant	rs11772558
Chromosome Location	chr7:27470086-27470087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27470047..27472027-chr7:27474314..27477072,2	K562	blood:
2	chr7:27468218..27471547-chr7:27472130..27475962,5	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10226764	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11761572	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11764246	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11764603	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11767850	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11768077	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11768223	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11768908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11770627	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11773352	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11773710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17429684	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17429691	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17429698	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17429719	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17429726	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17439312	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17439333	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62454767	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62454768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454788	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454793	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454824	0.85[EUR][1000 genomes]
rs6965319	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs6965852	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6977425	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27463400-27471800	Weak transcription	Spleen	Spleen
2	chr7:27465200-27472200	Weak transcription	Stomach Mucosa	stomach
3	chr7:27466200-27473800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:27469600-27472800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:27469800-27473000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:27470000-27472800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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