Variant report

Variant	rs62454767
Chromosome Location	chr7:27463652-27463653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10226764	0.91[EUR][1000 genomes]
rs11764603	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11768077	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11768908	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11770627	0.86[AMR][1000 genomes]
rs11772558	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11773352	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11773710	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62454768	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62454788	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62454791	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62454792	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62454793	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27458800-27464000	Weak transcription	HUVEC	blood vessel
2	chr7:27459200-27464600	Weak transcription	Pancreas	Pancrea
3	chr7:27461800-27464000	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr7:27461800-27464600	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr7:27461800-27465200	Enhancers	Stomach Mucosa	stomach
6	chr7:27462200-27463800	Enhancers	Colonic Mucosa	Colon
7	chr7:27462400-27464600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:27462600-27464600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:27462800-27464800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:27462800-27464800	Enhancers	HMEC	breast
11	chr7:27462800-27464800	Enhancers	NHEK	skin
12	chr7:27463200-27463800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
13	chr7:27463200-27465000	Enhancers	Duodenum Mucosa	Duodenum
14	chr7:27463400-27465000	Enhancers	A549	lung
15	chr7:27463400-27471800	Weak transcription	Spleen	Spleen
16	chr7:27463600-27463800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:27463600-27464800	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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