Variant report

Variant	rs11773352
Chromosome Location	chr7:27491436-27491437
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10226764	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11761572	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11764246	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11764603	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11767850	0.85[EUR][1000 genomes]
rs11768077	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11768223	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11768908	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11770627	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11772558	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11773710	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17429684	1.00[CEU][hapmap]
rs17429691	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17429698	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17429719	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17429726	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17439312	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17439333	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs62454767	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62454768	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62454788	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454791	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454792	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454793	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62454824	0.86[EUR][1000 genomes]
rs6965319	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6965852	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6977425	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27487200-27493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:27488800-27493400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:27489400-27493600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:27490800-27491800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links