Variant report

Variant	rs10241897
Chromosome Location	chr7:14862420-14862421
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10085416	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10085569	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10241696	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10276530	0.81[EUR][1000 genomes]
rs10487781	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10950537	0.88[EUR][1000 genomes]
rs12539188	0.83[EUR][1000 genomes]
rs12540439	0.83[EUR][1000 genomes]
rs13228522	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17368281	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1860582	0.87[EUR][1000 genomes]
rs1860583	0.85[EUR][1000 genomes]
rs2041407	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2109499	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2109500	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2191481	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2191482	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2215430	0.89[EUR][1000 genomes]
rs2358071	0.81[EUR][1000 genomes]
rs4719426	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4721380	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55635963	0.82[EUR][1000 genomes]
rs56057308	0.87[EUR][1000 genomes]
rs56159434	0.82[EUR][1000 genomes]
rs62448747	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62448749	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461137	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7806933	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs975689	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14855800-14873200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:14859200-14865200	Weak transcription	Stomach Mucosa	stomach
3	chr7:14862200-14870200	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links