Variant report
| Variant | rs55635963 |
|---|---|
| Chromosome Location | chr7:14893484-14893485 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10241897 | 0.82[EUR][1000 genomes] |
| rs10950537 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12539188 | 0.99[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12540439 | 0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13228522 | 0.83[EUR][1000 genomes] |
| rs17368281 | 0.85[EUR][1000 genomes] |
| rs1860582 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1860583 | 0.94[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2041407 | 0.82[EUR][1000 genomes] |
| rs2041408 | 0.82[EUR][1000 genomes] |
| rs2191475 | 0.95[ASN][1000 genomes] |
| rs2215385 | 0.87[ASN][1000 genomes] |
| rs2215430 | 0.94[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2358071 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4719426 | 0.84[EUR][1000 genomes] |
| rs4719429 | 0.90[ASN][1000 genomes] |
| rs4721380 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs56057308 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs56159434 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs62448747 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs62448749 | 0.82[EUR][1000 genomes] |
| rs73056941 | 0.92[ASN][1000 genomes] |
| rs975689 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs994368 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1031041 | chr7:14624127-14999201 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv538741 | chr7:14624127-14999201 | Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv887713 | chr7:14888418-14939924 | Weak transcription Enhancers Active TSS | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv887714 | chr7:14888418-14941576 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14888400-14898600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr7:14891600-14894400 | Weak transcription | Fetal Heart | heart |
