Variant report

Variant	rs62448747
Chromosome Location	chr7:14858584-14858585
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10085416	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10085569	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10241696	0.82[EUR][1000 genomes]
rs10241897	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10487781	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10950537	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12539188	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12540439	0.85[EUR][1000 genomes]
rs13228522	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17368281	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1860582	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1860583	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2041407	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2041408	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2109499	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2109500	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2191481	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2191482	0.83[EUR][1000 genomes]
rs2215430	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2358071	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4719426	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4721380	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55635963	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56057308	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56159434	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62448749	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6461137	0.86[EUR][1000 genomes]
rs7806933	0.86[EUR][1000 genomes]
rs975689	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14847400-14861400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:14855800-14873200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:14858000-14859200	Enhancers	Stomach Mucosa	stomach

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