Variant report

Variant	rs4719426
Chromosome Location	chr7:14879119-14879120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10085416	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10085569	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10241696	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10241897	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10276530	0.82[AMR][1000 genomes]
rs10487781	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10950537	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12539188	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12540439	0.86[EUR][1000 genomes]
rs13228522	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17368281	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860582	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1860583	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2041407	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2041408	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2109500	0.81[AMR][1000 genomes]
rs2191482	0.82[EUR][1000 genomes]
rs2215430	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2358071	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4721380	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55635963	0.84[EUR][1000 genomes]
rs56057308	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56159434	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62448747	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62448749	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6461137	0.80[EUR][1000 genomes]
rs7806933	0.80[EUR][1000 genomes]
rs975689	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14873400-14881200	Weak transcription	NHLF	lung
2	chr7:14875400-14886200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:14876600-14879600	Weak transcription	NHDF-Ad	bronchial
4	chr7:14877000-14879800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr7:14877000-14880400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:14877000-14880400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:14877000-14880400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:14877000-14881000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:14877000-14883200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:14877000-14886000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:14877200-14880200	Weak transcription	NH-A	brain
12	chr7:14877800-14879800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:14878000-14880600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr7:14878200-14882600	Enhancers	Osteobl	bone

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