Variant report

Variant	rs13228522
Chromosome Location	chr7:14874439-14874440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10085416	0.82[EUR][1000 genomes]
rs10241897	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10950537	0.89[EUR][1000 genomes]
rs12539188	0.84[EUR][1000 genomes]
rs12540439	0.84[EUR][1000 genomes]
rs17368281	0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1860582	0.88[EUR][1000 genomes]
rs1860583	0.86[EUR][1000 genomes]
rs2041407	0.84[CHB][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2041408	0.85[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2109499	0.80[EUR][1000 genomes]
rs2109500	0.80[EUR][1000 genomes]
rs2215430	0.85[EUR][1000 genomes]
rs2358071	0.82[EUR][1000 genomes]
rs4719426	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4721380	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55635963	0.83[EUR][1000 genomes]
rs56057308	0.88[EUR][1000 genomes]
rs56159434	0.83[EUR][1000 genomes]
rs62448747	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62448749	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6461137	0.81[EUR][1000 genomes]
rs7806933	0.81[EUR][1000 genomes]
rs975689	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14872400-14876000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:14872400-14876000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:14872400-14877000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:14872400-14877600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:14872800-14875800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:14872800-14877000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:14873000-14874800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:14873200-14875400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:14873200-14875800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr7:14873200-14876200	Enhancers	Brain Germinal Matrix	brain
11	chr7:14873200-14876600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr7:14873200-14876600	Enhancers	NHDF-Ad	bronchial
13	chr7:14873200-14877600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr7:14873400-14877000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:14873400-14881200	Weak transcription	NHLF	lung
16	chr7:14873600-14875000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:14873600-14875000	Weak transcription	Fetal Brain Female	brain
18	chr7:14873600-14877200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr7:14873800-14875200	Weak transcription	Fetal Brain Male	brain
20	chr7:14873800-14876000	Enhancers	HSMMtube	muscle
21	chr7:14874000-14874600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr7:14874000-14875000	Flanking Active TSS	Fetal Heart	heart
23	chr7:14874000-14876000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:14874000-14877000	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr7:14874000-14877600	Enhancers	H1 Cell Line	embryonic stem cell
26	chr7:14874200-14874600	Enhancers	Brain Angular Gyrus	brain
27	chr7:14874200-14874800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:14874200-14876200	Enhancers	Hela-S3	cervix
29	chr7:14874200-14876200	Enhancers	Osteobl	bone
30	chr7:14874400-14874600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:14874400-14874600	Flanking Active TSS	NH-A	brain
32	chr7:14874400-14874800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr7:14874400-14874800	Weak transcription	Fetal Muscle Leg	muscle
34	chr7:14874400-14876000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:14874400-14876000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:14874400-14876000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr7:14874400-14877000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr7:14874400-14877000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:14874400-14878200	Weak transcription	Brain Anterior Caudate	brain

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