Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10085416	0.81[CEU][hapmap]
rs10241897	0.87[EUR][1000 genomes]
rs10487781	0.81[CEU][hapmap]
rs10950537	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12539188	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12540439	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13228522	0.88[EUR][1000 genomes]
rs17368281	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1860583	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2041407	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs2041408	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs2109500	0.82[CEU][hapmap]
rs2215430	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2358071	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4719426	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4721380	0.92[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55635963	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56057308	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56159434	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62448747	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62448749	0.87[EUR][1000 genomes]
rs975689	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14885200-14886600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:14885400-14886600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr7:14886000-14886600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:14886200-14886600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:14886400-14891400	Weak transcription	Psoas Muscle	Psoas

Quick Search: