Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10241897	0.83[EUR][1000 genomes]
rs10950537	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12539188	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13228522	0.84[EUR][1000 genomes]
rs17368281	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs1860582	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1860583	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2041407	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2041408	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs2191475	0.87[ASN][1000 genomes]
rs2215385	0.89[ASN][1000 genomes]
rs2215430	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2358071	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4719426	0.86[EUR][1000 genomes]
rs4719429	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4721380	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55635963	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56057308	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56159434	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62448747	0.85[EUR][1000 genomes]
rs62448749	0.83[EUR][1000 genomes]
rs73056941	0.95[ASN][1000 genomes]
rs975689	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs994368	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv887713	chr7:14888418-14939924	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv887714	chr7:14888418-14941576	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14888400-14898600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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