Variant report

Variant	rs10283632
Chromosome Location	chr9:100768760-100768761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100751400..100754135-chr9:100768209..100771208,2	MCF-7	breast:
2	chr9:100767752..100769741-chr9:100788658..100791290,2	K562	blood:
3	chr9:100763380..100766123-chr9:100768484..100771216,3	MCF-7	breast:
4	chr9:100749544..100751362-chr9:100767596..100769424,2	MCF-7	breast:
5	chr9:100683248..100685910-chr9:100768133..100772099,3	K562	blood:
6	chr9:100765048..100766771-chr9:100766811..100769374,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236896	Chromatin interaction
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10081625	1.00[CEU][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap];0.89[EUR][1000 genomes]
rs10081626	0.88[EUR][1000 genomes]
rs10283737	1.00[CEU][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs10984650	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10984775	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10984811	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10984822	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10984829	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10984862	0.91[EUR][1000 genomes]
rs12336903	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12338164	0.89[EUR][1000 genomes]
rs12343945	1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs13290142	0.89[EUR][1000 genomes]
rs28459874	0.89[EUR][1000 genomes]
rs28549286	0.89[EUR][1000 genomes]
rs28576751	0.89[EUR][1000 genomes]
rs28660049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28715400	0.89[EUR][1000 genomes]
rs66865656	0.88[EUR][1000 genomes]
rs7030197	0.87[EUR][1000 genomes]
rs7861102	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs872251	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382311	chr9:100768690-100769002	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10283632	ANP32B	cis	cerebellum	SCAN
rs10283632	NANS	cis	cerebellum	SCAN
rs10283632	LPPR1	cis	parietal	SCAN
rs10283632	C9orf102	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100752000-100784000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100753000-100769000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:100754600-100784200	Strong transcription	Dnd41	blood
4	chr9:100754600-100784400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:100755200-100782200	Strong transcription	HepG2	liver
6	chr9:100755200-100783800	Strong transcription	NHEK	skin
7	chr9:100755400-100783000	Weak transcription	Stomach Mucosa	stomach
8	chr9:100755600-100769200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr9:100755600-100784400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:100755800-100782200	Strong transcription	K562	blood
11	chr9:100756000-100777800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:100756400-100772600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr9:100756400-100783600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:100756400-100783800	Strong transcription	Fetal Muscle Trunk	muscle
15	chr9:100756400-100784400	Strong transcription	Fetal Thymus	thymus
16	chr9:100756600-100785600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr9:100756800-100771600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:100756800-100771800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr9:100756800-100781200	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:100756800-100783000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:100756800-100783400	Strong transcription	HMEC	breast
22	chr9:100757000-100769400	Strong transcription	HUVEC	blood vessel
23	chr9:100757000-100771000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:100757000-100771600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr9:100757000-100771600	Strong transcription	HSMM	muscle
26	chr9:100757000-100771800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr9:100757000-100772200	Strong transcription	Primary B cells from peripheral blood	blood
28	chr9:100757000-100772600	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr9:100757000-100781000	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr9:100757000-100785200	Strong transcription	Placenta	Placenta
31	chr9:100757200-100783600	Strong transcription	Liver	Liver
32	chr9:100757400-100770800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:100757400-100784000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr9:100757600-100772600	Strong transcription	Duodenum Mucosa	Duodenum
35	chr9:100757600-100784400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr9:100757800-100772400	Strong transcription	Primary B cells from cord blood	blood
37	chr9:100757800-100782200	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr9:100758400-100780800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr9:100759600-100771000	Strong transcription	Primary hematopoietic stem cells	blood
40	chr9:100760000-100769400	Strong transcription	A549	lung
41	chr9:100760400-100772400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:100760600-100770200	Weak transcription	Psoas Muscle	Psoas
43	chr9:100760800-100783600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr9:100761400-100770800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr9:100761600-100772000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:100761600-100772800	Strong transcription	Fetal Intestine Large	intestine
47	chr9:100761600-100772800	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr9:100761800-100784400	Strong transcription	Thymus	Thymus
49	chr9:100762000-100770800	Strong transcription	Lung	lung
50	chr9:100762600-100785400	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links