Variant report

Variant	rs10984862
Chromosome Location	chr9:100798217-100798218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100797529..100799265-chr9:100810758..100812808,2	K562	blood:
2	chr9:100684661..100686943-chr9:100794140..100799259,5	K562	blood:
3	chr9:100744061..100747104-chr9:100795931..100798859,4	MCF-7	breast:
4	chr9:100793900..100798932-chr9:100816820..100821233,8	MCF-7	breast:
5	chr9:100796342..100798790-chr9:101837762..101839571,2	K562	blood:
6	chr9:100796501..100799835-chr9:100807798..100809968,3	K562	blood:
7	chr9:100797145..100798657-chr9:100798784..100800862,2	K562	blood:
8	chr9:100684056..100686567-chr9:100797424..100799144,2	MCF-7	breast:
9	chr9:100789228..100794108-chr9:100794751..100799924,8	K562	blood:
10	chr9:100776438..100779728-chr9:100795602..100798720,4	K562	blood:
11	chr9:100797667..100799438-chr9:100803367..100805131,2	MCF-7	breast:
12	chr9:100705623..100707205-chr9:100796922..100798794,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000136938	Chromatin interaction
ENSG00000136929	Chromatin interaction
ENSG00000095380	Chromatin interaction
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10081625	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10081626	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10283632	0.91[EUR][1000 genomes]
rs10283737	0.96[EUR][1000 genomes]
rs10984650	0.90[EUR][1000 genomes]
rs10984775	0.91[EUR][1000 genomes]
rs10984811	0.96[EUR][1000 genomes]
rs10984822	0.94[EUR][1000 genomes]
rs10984829	0.95[EUR][1000 genomes]
rs12336903	0.90[EUR][1000 genomes]
rs12338164	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12343945	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13290142	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28459874	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28549286	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28576751	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28660049	0.91[EUR][1000 genomes]
rs28715400	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66865656	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7030197	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7861102	0.88[EUR][1000 genomes]
rs872251	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv3493282	chr9:100784615-100805700	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3493283	chr9:100784615-100805700	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100784000-100803800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:100785000-100801400	Weak transcription	Fetal Intestine Small	intestine
3	chr9:100795600-100800200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:100796800-100798400	Enhancers	Fetal Muscle Trunk	muscle
5	chr9:100796800-100798800	Enhancers	Primary B cells from peripheral blood	blood
6	chr9:100796800-100799600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr9:100797200-100799000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:100797200-100799000	Weak transcription	Right Atrium	heart
9	chr9:100797200-100799200	Weak transcription	Left Ventricle	heart
10	chr9:100797200-100799200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:100797200-100799600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr9:100797200-100799600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:100797200-100799800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr9:100797200-100799800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr9:100797200-100800200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:100797200-100800200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:100797400-100798400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:100797400-100799400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:100797400-100799600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:100797400-100799600	Weak transcription	Adipose Nuclei	Adipose
21	chr9:100797400-100799600	Weak transcription	Colonic Mucosa	Colon
22	chr9:100797400-100800000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr9:100797400-100801200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr9:100797400-100802000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:100797800-100799000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:100797800-100799000	Weak transcription	Esophagus	oesophagus
27	chr9:100797800-100799600	Weak transcription	Right Ventricle	heart
28	chr9:100797800-100799800	Weak transcription	K562	blood
29	chr9:100797800-100800600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr9:100798000-100799200	Weak transcription	Psoas Muscle	Psoas
31	chr9:100798000-100799200	Weak transcription	Hela-S3	cervix
32	chr9:100798000-100799200	Weak transcription	NHDF-Ad	bronchial
33	chr9:100798000-100799600	Weak transcription	HSMM	muscle
34	chr9:100798000-100799600	Weak transcription	NHEK	skin
35	chr9:100798000-100799600	Weak transcription	NHLF	lung
36	chr9:100798000-100799800	Weak transcription	Placenta	Placenta
37	chr9:100798000-100799800	Weak transcription	Osteobl	bone
38	chr9:100798000-100800200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr9:100798000-100801400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:100798000-100801800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:100798000-100807000	Weak transcription	Spleen	Spleen
42	chr9:100798000-100807600	Weak transcription	HSMMtube	muscle
43	chr9:100798200-100799000	Weak transcription	HMEC	breast
44	chr9:100798200-100799400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr9:100798200-100799600	Weak transcription	HUVEC	blood vessel
46	chr9:100798200-100799600	Weak transcription	NH-A	brain
47	chr9:100798200-100799800	Weak transcription	Fetal Muscle Leg	muscle
48	chr9:100798200-100801400	Enhancers	GM12878-XiMat	blood
49	chr9:100798200-100807400	Weak transcription	Primary B cells from cord blood	blood

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