Variant report

Variant	rs10984822
Chromosome Location	chr9:100786614-100786615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100784033..100788653-chr9:100792674..100797277,7	K562	blood:
2	chr9:100744444..100747134-chr9:100785763..100788080,2	MCF-7	breast:
3	chr9:100785298..100787533-chr9:100792674..100795368,2	K562	blood:
4	chr9:100786498..100789736-chr9:100818544..100820292,3	MCF-7	breast:
5	chr9:100785373..100787194-chr9:100798359..100800018,2	K562	blood:

Variant related genes	Relation type
ENSG00000212521	Chromatin interaction
ENSG00000136938	Chromatin interaction
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10081625	0.92[EUR][1000 genomes]
rs10081626	0.92[EUR][1000 genomes]
rs10283632	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10283737	0.97[EUR][1000 genomes]
rs10984650	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10984775	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10984811	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10984829	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10984862	0.94[EUR][1000 genomes]
rs12336903	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12338164	0.92[EUR][1000 genomes]
rs12343945	0.92[EUR][1000 genomes]
rs13290142	0.92[EUR][1000 genomes]
rs28459874	0.92[EUR][1000 genomes]
rs28549286	0.92[EUR][1000 genomes]
rs28576751	0.92[EUR][1000 genomes]
rs28660049	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28715400	0.92[EUR][1000 genomes]
rs66865656	0.92[EUR][1000 genomes]
rs7030197	0.91[EUR][1000 genomes]
rs7861102	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs872251	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv3493282	chr9:100784615-100805700	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3493283	chr9:100784615-100805700	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100770600-100788400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:100776400-100787400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:100778800-100788400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:100780000-100788800	Weak transcription	Fetal Kidney	kidney
5	chr9:100781400-100788200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:100781800-100788800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:100781800-100791800	Weak transcription	Hela-S3	cervix
8	chr9:100781800-100796800	Weak transcription	Brain Anterior Caudate	brain
9	chr9:100781800-100796800	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:100782000-100787800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:100782000-100796800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr9:100782200-100787400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr9:100782200-100788000	Weak transcription	Colonic Mucosa	Colon
14	chr9:100782200-100788600	Weak transcription	K562	blood
15	chr9:100782200-100792400	Weak transcription	Aorta	Aorta
16	chr9:100782200-100794200	Weak transcription	NHDF-Ad	bronchial
17	chr9:100782200-100796800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr9:100782200-100796800	Weak transcription	HepG2	liver
19	chr9:100782400-100787200	Weak transcription	Primary B cells from cord blood	blood
20	chr9:100782400-100796800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:100782400-100797000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:100783000-100791200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:100783400-100786800	Weak transcription	HMEC	breast
24	chr9:100783600-100788400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:100783600-100789200	Weak transcription	Brain Germinal Matrix	brain
26	chr9:100783600-100789400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr9:100783600-100796800	Weak transcription	Liver	Liver
28	chr9:100783600-100796800	Weak transcription	A549	lung
29	chr9:100783600-100797000	Weak transcription	Brain Substantia Nigra	brain
30	chr9:100783800-100797000	Weak transcription	NHEK	skin
31	chr9:100784000-100788800	Weak transcription	Pancreas	Pancrea
32	chr9:100784000-100789000	Weak transcription	Esophagus	oesophagus
33	chr9:100784000-100803800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:100784200-100787000	Weak transcription	Small Intestine	intestine
35	chr9:100784200-100788400	Weak transcription	Ovary	ovary
36	chr9:100784200-100790600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr9:100784200-100792200	Weak transcription	Primary hematopoietic stem cells	blood
38	chr9:100784200-100794800	Weak transcription	GM12878-XiMat	blood
39	chr9:100784200-100796800	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr9:100784200-100796800	Weak transcription	Gastric	stomach
41	chr9:100784200-100796800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr9:100784200-100796800	Weak transcription	Dnd41	blood
43	chr9:100784200-100796800	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr9:100784200-100797000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr9:100784400-100787000	Weak transcription	Psoas Muscle	Psoas
46	chr9:100784400-100787400	Weak transcription	Lung	lung
47	chr9:100784400-100788600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr9:100784400-100791800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr9:100784400-100794200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr9:100784400-100794200	Weak transcription	HSMM	muscle

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