Variant report

Variant	rs12336903
Chromosome Location	chr9:100741890-100741891
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr9:100741876-100746321	K562	blood:	n/a	chr9:100745695-100745704 chr9:100746200-100746209 chr9:100746025-100746034

No.	Distal block	Cell Line	Cell type
1	chr9:100675954..100709047-chr9:100737887..100755543,175	K562	blood:
2	chr9:100693503..100695720-chr9:100740992..100742797,2	MCF-7	breast:
3	chr9:100682029..100688801-chr9:100740969..100749393,29	MCF-7	breast:
4	chr9:100678422..100708679-chr9:100734559..100755577,174	K562	blood:
5	chr9:100682507..100691249-chr9:100739828..100748095,35	MCF-7	breast:

Variant related genes	Relation type
ANP32B	TF binding region
ENSG00000136932	Chromatin interaction
ENSG00000136929	Chromatin interaction
ENSG00000201830	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10081625	0.88[EUR][1000 genomes]
rs10081626	0.87[EUR][1000 genomes]
rs10283632	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10283737	0.94[EUR][1000 genomes]
rs10984650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984775	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10984811	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10984822	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10984829	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10984862	0.90[EUR][1000 genomes]
rs12338164	0.88[EUR][1000 genomes]
rs12343945	0.87[EUR][1000 genomes]
rs13290142	0.88[EUR][1000 genomes]
rs28459874	0.88[EUR][1000 genomes]
rs28549286	0.88[EUR][1000 genomes]
rs28576751	0.88[EUR][1000 genomes]
rs28660049	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28715400	0.88[EUR][1000 genomes]
rs66865656	0.87[EUR][1000 genomes]
rs7030197	0.86[EUR][1000 genomes]
rs7861102	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs872251	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893612	chr9:100732802-100754703	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100735800-100744800	Weak transcription	Right Atrium	heart
2	chr9:100736000-100743400	Weak transcription	Dnd41	blood
3	chr9:100738200-100742600	Weak transcription	NHDF-Ad	bronchial
4	chr9:100740600-100745600	Enhancers	Fetal Brain Male	brain
5	chr9:100740800-100742200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:100740800-100742400	Enhancers	Brain Hippocampus Middle	brain
7	chr9:100740800-100742800	Enhancers	Brain Angular Gyrus	brain
8	chr9:100740800-100742800	Enhancers	Brain Cingulate Gyrus	brain
9	chr9:100740800-100742800	Enhancers	Brain Substantia Nigra	brain
10	chr9:100740800-100744200	Enhancers	Fetal Brain Female	brain
11	chr9:100740800-100744600	Enhancers	Primary T cells from cord blood	blood
12	chr9:100740800-100744600	Weak transcription	Spleen	Spleen
13	chr9:100741000-100742400	Enhancers	K562	blood
14	chr9:100741000-100742600	Enhancers	Colon Smooth Muscle	Colon
15	chr9:100741000-100743200	Enhancers	Brain Anterior Caudate	brain
16	chr9:100741000-100743400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:100741000-100743400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr9:100741000-100743800	Enhancers	Fetal Thymus	thymus
19	chr9:100741000-100744400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr9:100741200-100744600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:100741400-100742200	Weak transcription	Fetal Muscle Leg	muscle
22	chr9:100741400-100742400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr9:100741400-100744600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr9:100741400-100744600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:100741400-100744600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr9:100741400-100744800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr9:100741600-100742800	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr9:100741600-100743800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:100741600-100744200	Enhancers	Thymus	Thymus
30	chr9:100741800-100742200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr9:100741800-100744600	Enhancers	Primary T killer memory cells from peripheral blood	blood

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