Variant report

Variant	rs13290142
Chromosome Location	chr9:100801807-100801808
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100799859..100802210-chr9:100818612..100820734,3	K562	blood:
2	chr9:100683608..100686455-chr9:100800996..100802948,2	K562	blood:
3	chr9:100799367..100802266-chr9:100805470..100807708,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10081625	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10081626	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10283632	0.89[EUR][1000 genomes]
rs10283737	0.94[EUR][1000 genomes]
rs10984650	0.88[EUR][1000 genomes]
rs10984775	0.89[EUR][1000 genomes]
rs10984811	0.94[EUR][1000 genomes]
rs10984822	0.92[EUR][1000 genomes]
rs10984829	0.93[EUR][1000 genomes]
rs10984862	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12336903	0.88[EUR][1000 genomes]
rs12338164	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12343945	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28459874	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28549286	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28576751	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28660049	0.89[EUR][1000 genomes]
rs28715400	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66865656	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7030197	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7861102	0.86[EUR][1000 genomes]
rs872251	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv3493282	chr9:100784615-100805700	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3493283	chr9:100784615-100805700	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100784000-100803800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:100797400-100802000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:100798000-100807000	Weak transcription	Spleen	Spleen
4	chr9:100798000-100807600	Weak transcription	HSMMtube	muscle
5	chr9:100798200-100807400	Weak transcription	Primary B cells from cord blood	blood
6	chr9:100800200-100807000	Weak transcription	K562	blood
7	chr9:100800400-100806200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:100800600-100805800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:100800800-100802600	Bivalent Enhancer	HepG2	liver
10	chr9:100801200-100802800	Enhancers	Primary B cells from peripheral blood	blood
11	chr9:100801200-100802800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr9:100801400-100802400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:100801400-100802400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:100801400-100802400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:100801400-100802400	Enhancers	Osteobl	bone
16	chr9:100801400-100802600	Enhancers	Fetal Intestine Small	intestine
17	chr9:100801400-100802800	Flanking Active TSS	GM12878-XiMat	blood
18	chr9:100801600-100802000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:100801600-100806000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr9:100801800-100802000	Flanking Active TSS	Colonic Mucosa	Colon
21	chr9:100801800-100802000	Enhancers	NH-A	brain
22	chr9:100801800-100802200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:100801800-100802200	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr9:100801800-100802200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
25	chr9:100801800-100802400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:100801800-100807400	Weak transcription	HSMM	muscle

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