Variant report

Variant	rs10399998
Chromosome Location	chr10:93296477-93296478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93286272..93289010-chr10:93295360..93297242,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10881917	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186558	1.00[CEU][hapmap]
rs11186565	1.00[CEU][hapmap]
rs11186570	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs11186575	1.00[GIH][hapmap]
rs11186580	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs11186584	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs11186585	1.00[CEU][hapmap]
rs11186596	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs11186597	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs11186607	0.98[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12241174	1.00[CEU][hapmap]
rs12245101	1.00[GIH][hapmap]
rs12249854	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs12253137	1.00[CEU][hapmap]
rs12259631	0.87[EUR][1000 genomes]
rs12259834	0.82[EUR][1000 genomes]
rs12263089	1.00[CEU][hapmap]
rs1329652	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs13376868	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs1360187	1.00[CEU][hapmap]
rs17106645	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs17106657	1.00[GIH][hapmap];0.81[TSI][hapmap]
rs2068866	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs3904193	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3904194	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4376822	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs4586060	1.00[CEU][hapmap]
rs56826659	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6583775	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs6583776	1.00[GIH][hapmap];0.81[TSI][hapmap]
rs6583777	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs7072087	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs7076784	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs7077014	1.00[CEU][hapmap]
rs7077715	1.00[CEU][hapmap]
rs7091647	1.00[CEU][hapmap]
rs7342052	1.00[CEU][hapmap]
rs7478184	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs7898845	1.00[CEU][hapmap]
rs7904917	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs7907010	1.00[CEU][hapmap]
rs7908457	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs7910115	1.00[GIH][hapmap]
rs7910864	1.00[CEU][hapmap]
rs7914133	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs7914794	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs7916523	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs7920553	1.00[GIH][hapmap]
rs7920604	1.00[GIH][hapmap];0.81[TSI][hapmap]
rs9943307	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93278400-93298400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:93290800-93297000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:93295600-93297200	Enhancers	NHDF-Ad	bronchial
4	chr10:93296000-93296600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:93296000-93296600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:93296000-93296800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr10:93296000-93296800	Enhancers	Aorta	Aorta
8	chr10:93296000-93297000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:93296000-93297000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:93296000-93297200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:93296000-93297200	Enhancers	Esophagus	oesophagus
12	chr10:93296000-93297200	Enhancers	Right Atrium	heart
13	chr10:93296000-93297200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:93296000-93297200	Enhancers	NHLF	lung
15	chr10:93296000-93297400	Enhancers	Fetal Stomach	stomach
16	chr10:93296000-93297600	Enhancers	Ovary	ovary
17	chr10:93296000-93298200	Enhancers	Fetal Lung	lung
18	chr10:93296000-93298400	Enhancers	Liver	Liver
19	chr10:93296200-93296600	Weak transcription	Pancreas	Pancrea
20	chr10:93296200-93296600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr10:93296200-93296800	Enhancers	Stomach Smooth Muscle	stomach
22	chr10:93296200-93297000	Enhancers	Left Ventricle	heart
23	chr10:93296200-93297200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:93296200-93297200	Enhancers	Fetal Kidney	kidney
25	chr10:93296200-93297400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr10:93296200-93300000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr10:93296200-93300200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:93296200-93312200	Weak transcription	Psoas Muscle	Psoas
29	chr10:93296400-93297000	Enhancers	Hela-S3	cervix
30	chr10:93296400-93297000	Enhancers	Osteobl	bone
31	chr10:93296400-93297400	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links