Variant report

Variant	rs3904194
Chromosome Location	chr10:93287597-93287598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93286272..93289010-chr10:93295360..93297242,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10399998	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10881917	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11186558	1.00[CEU][hapmap]
rs11186560	0.89[AFR][1000 genomes]
rs11186565	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs11186570	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs11186573	0.91[AFR][1000 genomes]
rs11186580	1.00[CEU][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11186584	1.00[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11186585	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11186586	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11186596	1.00[CEU][hapmap];0.83[YRI][hapmap];0.85[EUR][1000 genomes]
rs11186597	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11186607	0.87[EUR][1000 genomes]
rs12241174	1.00[CEU][hapmap]
rs12247442	0.82[AFR][1000 genomes]
rs12247942	0.88[AFR][1000 genomes]
rs12249854	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs12253137	1.00[CEU][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes]
rs12258185	0.82[AFR][1000 genomes]
rs12259631	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12259834	0.82[EUR][1000 genomes]
rs12263089	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs12265269	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12268013	0.88[AFR][1000 genomes]
rs1329652	1.00[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs13376868	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs1360187	1.00[CEU][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17106645	1.00[CEU][hapmap]
rs17106657	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs2068866	1.00[CEU][hapmap]
rs3904193	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4376822	1.00[CEU][hapmap]
rs4415665	0.82[AFR][1000 genomes]
rs4586060	1.00[CEU][hapmap]
rs55718133	0.91[AFR][1000 genomes]
rs56097320	0.91[AFR][1000 genomes]
rs57988119	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6583775	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs6583776	0.96[YRI][hapmap];0.93[AFR][1000 genomes]
rs6583777	1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7072087	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7075344	0.85[EUR][1000 genomes]
rs7075424	0.91[AFR][1000 genomes]
rs7076784	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs7077014	1.00[CEU][hapmap];0.97[YRI][hapmap];0.91[AFR][1000 genomes]
rs7077715	1.00[CEU][hapmap]
rs7091647	1.00[CEU][hapmap]
rs73316216	0.89[AFR][1000 genomes]
rs7342052	1.00[CEU][hapmap];0.97[YRI][hapmap];0.91[AFR][1000 genomes]
rs7478184	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7894248	0.93[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7895666	0.93[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7898769	0.88[AFR][1000 genomes]
rs7898845	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7904917	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs7906306	0.84[AFR][1000 genomes]
rs7907010	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs7908457	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7908769	0.97[YRI][hapmap];0.91[AFR][1000 genomes]
rs7910864	1.00[CEU][hapmap]
rs7914133	1.00[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7914794	1.00[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7916523	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs7919797	0.90[AFR][1000 genomes]
rs7920604	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs9651433	0.89[AFR][1000 genomes]
rs9804186	0.91[AFR][1000 genomes]
rs9804311	0.87[AFR][1000 genomes]
rs9943307	1.00[CEU][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93263800-93288000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93272200-93296000	Weak transcription	HSMMtube	muscle
3	chr10:93278200-93296000	Weak transcription	HSMM	muscle
4	chr10:93278400-93298400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:93280800-93287600	Weak transcription	Psoas Muscle	Psoas
6	chr10:93285400-93289200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:93286200-93287600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:93286200-93287800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:93286400-93288400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:93287000-93288000	Weak transcription	Fetal Lung	lung
11	chr10:93287000-93288000	Weak transcription	Pancreas	Pancrea
12	chr10:93287400-93288800	Flanking Active TSS	Liver	Liver

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