Variant report

Variant	rs12247442
Chromosome Location	chr10:93214762-93214763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs11186558	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186560	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186565	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186567	0.95[ASN][1000 genomes]
rs11186570	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186573	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186574	1.00[ASN][1000 genomes]
rs11186575	1.00[ASN][1000 genomes]
rs11186580	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186584	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186585	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11186586	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11186595	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11186596	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11186597	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11186604	0.87[ASN][1000 genomes]
rs11186605	0.89[ASN][1000 genomes]
rs11186606	0.87[ASN][1000 genomes]
rs11186607	0.95[ASN][1000 genomes]
rs12240706	0.91[ASN][1000 genomes]
rs12241174	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12242238	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12242257	0.95[ASN][1000 genomes]
rs12242663	1.00[ASN][1000 genomes]
rs12242821	0.91[ASN][1000 genomes]
rs12244155	0.87[ASN][1000 genomes]
rs12245101	0.98[ASN][1000 genomes]
rs12247672	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12247942	0.87[AFR][1000 genomes]
rs12249854	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12250037	0.95[ASN][1000 genomes]
rs12253137	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12253556	0.98[ASN][1000 genomes]
rs12257663	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12258185	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12258439	1.00[ASN][1000 genomes]
rs12259631	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12259834	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261527	0.98[ASN][1000 genomes]
rs12262057	0.98[ASN][1000 genomes]
rs12263089	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12265269	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12266112	1.00[ASN][1000 genomes]
rs12268013	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12269643	0.95[ASN][1000 genomes]
rs1329652	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376715	1.00[ASN][1000 genomes]
rs13376868	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1360187	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17106645	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17106657	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2068866	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2421517	1.00[ASN][1000 genomes]
rs3904193	0.83[AFR][1000 genomes]
rs3904194	0.82[AFR][1000 genomes]
rs4376822	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4415665	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4586060	0.84[EUR][1000 genomes]
rs55718133	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55762845	0.83[ASN][1000 genomes]
rs56097320	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57033814	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57159565	1.00[ASN][1000 genomes]
rs57314370	0.98[ASN][1000 genomes]
rs57988119	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57996677	0.89[ASN][1000 genomes]
rs59198703	1.00[ASN][1000 genomes]
rs59758370	1.00[ASN][1000 genomes]
rs60640820	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61579794	1.00[ASN][1000 genomes]
rs6583769	0.81[ASN][1000 genomes]
rs6583770	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6583775	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583776	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583777	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7072087	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074559	1.00[ASN][1000 genomes]
rs7075344	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7075424	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076784	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7077014	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7077715	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7081363	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7085276	1.00[ASN][1000 genomes]
rs7091647	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7100516	0.98[ASN][1000 genomes]
rs73316210	0.89[ASN][1000 genomes]
rs73316216	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73316246	1.00[ASN][1000 genomes]
rs73316284	0.98[ASN][1000 genomes]
rs7342052	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7478184	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7893331	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7893826	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7894248	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895666	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898769	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7898845	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904917	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7905307	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7906306	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7906515	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7907010	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907154	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7908457	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908769	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7910115	0.95[ASN][1000 genomes]
rs7910864	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7911332	0.84[ASN][1000 genomes]
rs7914133	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914794	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915331	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7916523	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7919797	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7920500	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7920553	1.00[ASN][1000 genomes]
rs7920604	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651433	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9804186	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9804311	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9943307	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895890	chr10:93176418-93219246	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93184400-93226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:93186000-93226800	Weak transcription	Pancreas	Pancrea
3	chr10:93196000-93220600	Weak transcription	Hela-S3	cervix
4	chr10:93213200-93221800	Weak transcription	HSMM	muscle
5	chr10:93213200-93224200	Weak transcription	Aorta	Aorta
6	chr10:93213400-93224000	Weak transcription	Psoas Muscle	Psoas
7	chr10:93213600-93222200	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:93214200-93219200	Weak transcription	Fetal Lung	lung
9	chr10:93214200-93219400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:93214200-93219800	Weak transcription	Adipose Nuclei	Adipose
11	chr10:93214200-93220800	Weak transcription	NHDF-Ad	bronchial
12	chr10:93214200-93222200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:93214200-93222400	Weak transcription	Dnd41	blood
14	chr10:93214200-93272000	Weak transcription	HUVEC	blood vessel
15	chr10:93214400-93218600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:93214400-93219000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:93214400-93220200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:93214400-93220200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:93214400-93220200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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